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PKP2 plakophilin 2 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100584224, updated on 8-Mar-2024

Summary

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Gene symbol
PKP2
Gene description
plakophilin 2
See related
EnsemblRapid:ENSNLEG00000016650
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 23 NC_044403.1 (1716965..1824739, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 23 NC_019838.1 (1752892..1872350, complement)

Chromosome 23 - NC_044403.1Genomic Context describing neighboring genes Neighboring gene FYVE, RhoGEF and PH domain containing 4 Neighboring gene nucleosome assembly protein 1-like 1 pseudogene Neighboring gene dynamin 1 like Neighboring gene tyrosyl-tRNA synthetase 2 Neighboring gene argininosuccinate synthase pseudogene Neighboring gene synaptotagmin 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-catenin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables intermediate filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase C binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in desmosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intercalated disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plakophilin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044403.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    1716965..1824739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030804721.1 → XP_030660581.1  plakophilin-2

    UniProtKB/TrEMBL
    A0A2I3GG54
    Related
    ENSNLEP00000046222.2, ENSNLET00000033091.2
    Conserved Domains (3) summary
    smart00185
    Location:384 → 424
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:388 → 424
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:426 → 466
    Arm; Armadillo/beta-catenin-like repeat
Nucleotide Protein
Heading Accession and Version

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