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pcdh18 protocadherin 18 [ Anolis carolinensis (green anole) ]

Gene ID: 100553125, updated on 8-Mar-2024

Summary

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Gene symbol
pcdh18
Gene description
protocadherin 18
See related
Ensembl:ENSACAG00000013347
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 5 NC_085845.1 (42825720..42834832, complement)
102 previous assembly AnoCar2.0 (GCF_000090745.1) 5 NC_014780.1 (121202491..121211554)

Chromosome 5 - NC_085845.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134299120 Neighboring gene uncharacterized LOC134299121 Neighboring gene uncharacterized LOC134299539 Neighboring gene solute carrier family 7 member 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085845.1 Reference rAnoCar3.1.pri

    Range
    42825720..42834832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062980860.1 → XP_062836930.1  protocadherin-18 isoform X2

  2. XM_003221660.4 → XP_003221708.1  protocadherin-18 isoform X1

    UniProtKB/TrEMBL
    G1KNM5
    Related
    ENSACAP00000013123.3
    Conserved Domains (2) summary
    cd11304
    Location:250 → 350
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:29 → 111
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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