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LOC100550479 chloride channel protein 1 [ Meleagris gallopavo (turkey) ]

Gene ID: 100550479, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100550479
Gene description
chloride channel protein 1
See related
Ensembl:ENSMGAG00000014188
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Also known as
CLCN1
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Genomic context

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See LOC100550479 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
25
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 1 NC_015011.2 (75049139..75097740, complement)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 1 NC_015011.1 (81270850..81306089, complement)

Chromosome 1 - NC_015011.2Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase kappa 1 Neighboring gene CD163 molecule like 1 Neighboring gene caspase 2 Neighboring gene uncharacterized LOC109368914 Neighboring gene rap1 GTPase-activating protein 1 Neighboring gene transmembrane protein 139

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chloride channel protein 1
Names
chloride channel 1, skeletal muscle
chloride voltage-gated channel 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015011.2 Reference Turkey_5.1 Primary Assembly

    Range
    75049139..75097740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010717557.3 → XP_010715859.1  chloride channel protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A803Y3M4, A0A803YD43
    Related
    ENSMGAP00000026371.1, ENSMGAT00000030804.1
    Conserved Domains (3) summary
    cd03683
    Location:85 → 571
    ClC_1_like; ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is ...
    cd02205
    Location:589 → 646
    CBS_pair_SF; CBS repeat [structural motif]
    cl15354
    Location:584 → 646
    CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

  2. XM_010717564.2 → XP_010715866.1  chloride channel protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A803YD43
    Related
    ENSMGAP00000029690.1, ENSMGAT00000027336.1
    Conserved Domains (3) summary
    cd03683
    Location:71 → 557
    ClC_1_like; ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is ...
    cd02205
    Location:575 → 632
    CBS_pair_SF; CBS repeat [structural motif]
    cl15354
    Location:570 → 632
    CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

  3. XM_010717517.3 → XP_010715819.1  chloride channel protein 1 isoform X2

    UniProtKB/TrEMBL
    G1NN13
    Conserved Domains (3) summary
    cd03683
    Location:131 → 617
    ClC_1_like; ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is ...
    cd02205
    Location:635 → 692
    CBS_pair_SF; CBS repeat [structural motif]
    cl15354
    Location:630 → 692
    CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

  4. XM_010717550.2 → XP_010715852.1  chloride channel protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A803YD43
    Conserved Domains (3) summary
    cd03683
    Location:133 → 576
    ClC_1_like; ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is ...
    cd02205
    Location:594 → 651
    CBS_pair_SF; CBS repeat [structural motif]
    cl15354
    Location:589 → 651
    CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

  5. XM_010717531.2 → XP_010715833.1  chloride channel protein 1 isoform X4

    UniProtKB/TrEMBL
    G1NN13
    Conserved Domains (3) summary
    cd03683
    Location:133 → 608
    ClC_1_like; ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is ...
    cd02205
    Location:626 → 683
    CBS_pair_SF; CBS repeat [structural motif]
    cl15354
    Location:621 → 683
    CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

  6. XM_010717524.2 → XP_010715826.1  chloride channel protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A803YD43
    Conserved Domains (3) summary
    cd03683
    Location:133 → 617
    ClC_1_like; ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is ...
    cd02205
    Location:635 → 692
    CBS_pair_SF; CBS repeat [structural motif]
    cl15354
    Location:630 → 692
    CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

  7. XM_010717512.2 → XP_010715814.1  chloride channel protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A803YD43
    Conserved Domains (3) summary
    cd03683
    Location:133 → 619
    ClC_1_like; ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is ...
    cd02205
    Location:637 → 694
    CBS_pair_SF; CBS repeat [structural motif]
    cl15354
    Location:632 → 694
    CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

  8. XM_019617905.2 → XP_019473450.1  chloride channel protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A803YD43
    Conserved Domains (3) summary
    cd03683
    Location:1 → 455
    ClC_1_like; ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is ...
    cd02205
    Location:473 → 530
    CBS_pair_SF; CBS repeat [structural motif]
    cl15354
    Location:468 → 530
    CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

  9. XM_010717571.3 → XP_010715873.1  chloride channel protein 1 isoform X8

    See identical proteins and their annotated locations for XP_010715873.1

    UniProtKB/TrEMBL
    A0A803Y3J5
    Conserved Domains (3) summary
    cd03683
    Location:133 → 619
    ClC_1_like; ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is ...
    cd02205
    Location:637 → 694
    CBS_pair_SF; CBS repeat [structural motif]
    cl15354
    Location:632 → 694
    CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily

  10. XM_010717578.2 → XP_010715880.1  chloride channel protein 1 isoform X8

    See identical proteins and their annotated locations for XP_010715880.1

    UniProtKB/TrEMBL
    A0A803Y3J5
    Conserved Domains (3) summary
    cd03683
    Location:133 → 619
    ClC_1_like; ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is ...
    cd02205
    Location:637 → 694
    CBS_pair_SF; CBS repeat [structural motif]
    cl15354
    Location:632 → 694
    CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
Nucleotide Protein
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