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ALKBH1 alkB homolog 1, histone H2A dioxygenase [ Meleagris gallopavo (turkey) ]

Gene ID: 100546801, updated on 11-Apr-2024

Summary

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Gene symbol
ALKBH1
Gene description
alkB homolog 1, histone H2A dioxygenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Orthologs
human mouse all
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Genomic context

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See ALKBH1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 5 NC_015015.2 (38423830..38434286, complement)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 5 NC_015015.1 (40942706..40953994, complement)

Chromosome 5 - NC_015015.2Genomic Context describing neighboring genes Neighboring gene isthmin 2 Neighboring gene serine palmitoyltransferase long chain base subunit 2 Neighboring gene uncharacterized LOC104911207 Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene SNW domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables broad specificity oxidative DNA demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferrous iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidative RNA demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oxidative RNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleic acid dioxygenase ALKBH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015015.2 Reference Turkey_5.1 Primary Assembly

    Range
    38423830..38434286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019615778.2 → XP_019471323.2  nucleic acid dioxygenase ALKBH1 isoform X1

    Conserved Domains (1) summary
    cl21496
    Location:1 → 155
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_031553620.1 → XP_031409480.1  nucleic acid dioxygenase ALKBH1 isoform X2

    Conserved Domains (1) summary
    cl21496
    Location:14 → 148
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
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