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LOC100542338 clathrin heavy chain 1 [ Meleagris gallopavo (turkey) ]

Gene ID: 100542338, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100542338
Gene description
clathrin heavy chain 1
See related
Ensembl:ENSMGAG00000000798
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Also known as
CLTCL1
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Genomic context

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Location:
chromosome: 17
Exon count:
34
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 17 NC_015027.2 (73480..114504, complement)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 17 NC_015027.1 (59372..98869, complement)

Chromosome 17 - NC_015027.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 25 member 1 Neighboring gene synaptosome associated protein 29 Neighboring gene phosphatidylinositol 4-kinase alpha Neighboring gene serpin family D member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin light chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor-mediated endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in clathrin-coated endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular exosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clathrin heavy chain 1; clathrin heavy chain 2
Names
clathrin heavy chain like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015027.2 Reference Turkey_5.1 Primary Assembly

    Range
    73480..114504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010719946.3 → XP_010718248.1  clathrin heavy chain 2 isoform X1

    UniProtKB/TrEMBL
    A0A803YRZ7
    Conserved Domains (5) summary
    smart00299
    Location:1274 → 1416
    CLH; Clathrin heavy chain repeat homology
    pfam01394
    Location:296 → 330
    Clathrin_propel; Clathrin propeller repeat
    pfam00637
    Location:1427 → 1561
    Clathrin; Region in Clathrin and VPS
    pfam09268
    Location:331 → 354
    Clathrin-link; Clathrin, heavy-chain linker
    pfam13838
    Location:356 → 421
    Clathrin_H_link; Clathrin-H-link

  2. XM_010719947.3 → XP_010718249.1  clathrin heavy chain 2 isoform X2

    UniProtKB/TrEMBL
    A0A803YRZ7
    Conserved Domains (5) summary
    smart00299
    Location:1274 → 1416
    CLH; Clathrin heavy chain repeat homology
    pfam01394
    Location:296 → 330
    Clathrin_propel; Clathrin propeller repeat
    pfam00637
    Location:1427 → 1561
    Clathrin; Region in Clathrin and VPS
    pfam09268
    Location:331 → 354
    Clathrin-link; Clathrin, heavy-chain linker
    pfam13838
    Location:356 → 421
    Clathrin_H_link; Clathrin-H-link

  3. XM_010719948.3 → XP_010718250.1  clathrin heavy chain 2 isoform X3

    UniProtKB/TrEMBL
    A0A803YRZ7, G1MQ72
    Related
    ENSMGAP00000000215.2, ENSMGAT00000000849.2
    Conserved Domains (5) summary
    smart00299
    Location:1274 → 1416
    CLH; Clathrin heavy chain repeat homology
    pfam01394
    Location:296 → 330
    Clathrin_propel; Clathrin propeller repeat
    pfam00637
    Location:1427 → 1561
    Clathrin; Region in Clathrin and VPS
    pfam09268
    Location:331 → 354
    Clathrin-link; Clathrin, heavy-chain linker
    pfam13838
    Location:356 → 421
    Clathrin_H_link; Clathrin-H-link

  4. XM_003210844.4 → XP_003210892.1  clathrin heavy chain 1 isoform X4

    UniProtKB/TrEMBL
    A0A803YRZ7, G3UV43
    Related
    ENSMGAP00000019712.2, ENSMGAT00000019970.2
    Conserved Domains (5) summary
    smart00299
    Location:1274 → 1416
    CLH; Clathrin heavy chain repeat homology
    pfam01394
    Location:296 → 330
    Clathrin_propel; Clathrin propeller repeat
    pfam00637
    Location:1427 → 1561
    Clathrin; Region in Clathrin and VPS
    pfam09268
    Location:331 → 354
    Clathrin-link; Clathrin, heavy-chain linker
    pfam13838
    Location:356 → 421
    Clathrin_H_link; Clathrin-H-link
Nucleotide Protein
Heading Accession and Version

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