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LOC100540909 DEP domain-containing protein 1A [ Meleagris gallopavo (turkey) ]

Gene ID: 100540909, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100540909
Gene description
DEP domain-containing protein 1A
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Also known as
DEPDC1
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC100540909 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 10 NC_015020.2 (18495120..18500464, complement)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 10 NC_015020.1 (29983607..29994375, complement)

Chromosome 10 - NC_015020.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109369292 Neighboring gene leucine rich repeat containing 7 Neighboring gene leucine-rich repeat-containing protein 40-like Neighboring gene methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like Neighboring gene DEP domain-containing protein 1A-like Neighboring gene retinoid isomerohydrolase RPE65

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription repressor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DEP domain-containing protein 1A
Names
DEP domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015020.2 Reference Turkey_5.1 Primary Assembly

    Range
    18495120..18500464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010716268.3 → XP_010714570.2  DEP domain-containing protein 1A

    Conserved Domains (1) summary
    cd04405
    Location:84 → 265
    RhoGAP_BRCC3-like; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal ...
Nucleotide Protein
Heading Accession and Version

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