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LOC100539909 matrix metalloproteinase-16 [ Meleagris gallopavo (turkey) ]

Gene ID: 100539909, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100539909
Gene description
matrix metalloproteinase-16
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 3 NC_015013.2 (67903528..67941195, complement)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 3 NC_015013.1 (74131767..74311214, complement)

Chromosome 3 - NC_015013.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116216477 Neighboring gene uncharacterized LOC109367029 Neighboring gene matrix metallopeptidase 16 Neighboring gene uncharacterized LOC116216478

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-16
Names
matrix metallopeptidase 16 (membrane-inserted)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015013.2 Reference Turkey_5.1 Primary Assembly

    Range
    67903528..67941195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031552964.1 → XP_031408824.1  matrix metalloproteinase-16

    Conserved Domains (3) summary
    PHA03247
    Location:185 → 276
    PHA03247; large tegument protein UL36; Provisional
    pfam00413
    Location:44 → 203
    Peptidase_M10; Matrixin
    cl02471
    Location:1 → 34
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
Nucleotide Protein
Heading Accession and Version

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