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LOC100538586 phosphatidylinositol-binding clathrin assembly protein [ Meleagris gallopavo (turkey) ]

Gene ID: 100538586, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100538586
Gene description
phosphatidylinositol-binding clathrin assembly protein
See related
Ensembl:ENSMGAG00000006921
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
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Genomic context

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See LOC100538586 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
20
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 9 NC_015019.2 (14075989..14096441, complement)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 9 NC_015019.1 (14098275..14121200, complement)

Chromosome 9 - NC_015019.2Genomic Context describing neighboring genes Neighboring gene synaptotagmin-like protein 2 Neighboring gene V-set and immunoglobulin domain containing 1 Neighboring gene RAB39B, member RAS oncogene family Neighboring gene VHL binding protein 1 Neighboring gene GRB2 associated binding protein 3 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle budding from presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in clathrin-coated vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol-binding clathrin assembly protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015019.2 Reference Turkey_5.1 Primary Assembly

    Range
    14075989..14096441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031554695.1 → XP_031410555.1  phosphatidylinositol-binding clathrin assembly protein isoform X6

    Conserved Domains (2) summary
    pfam07651
    Location:1 → 232
    ANTH; ANTH domain
    pfam03154
    Location:376 → 553
    Atrophin-1; Atrophin-1 family

  2. XM_031554692.1 → XP_031410552.1  phosphatidylinositol-binding clathrin assembly protein isoform X3

    UniProtKB/TrEMBL
    G1N575
    Related
    ENSMGAP00000007071.3, ENSMGAT00000007836.3
    Conserved Domains (1) summary
    pfam07651
    Location:1 → 232
    ANTH; ANTH domain

  3. XM_031554694.1 → XP_031410554.1  phosphatidylinositol-binding clathrin assembly protein isoform X5

    Conserved Domains (2) summary
    pfam03154
    Location:378 → 555
    Atrophin-1; Atrophin-1 family
    cl02544
    Location:1 → 234
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  4. XM_031554693.1 → XP_031410553.1  phosphatidylinositol-binding clathrin assembly protein isoform X4

    Conserved Domains (1) summary
    cl02544
    Location:1 → 234
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  5. XM_031554691.1 → XP_031410551.1  phosphatidylinositol-binding clathrin assembly protein isoform X2

    Conserved Domains (1) summary
    cl02544
    Location:1 → 234
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

  6. XM_031554690.1 → XP_031410550.1  phosphatidylinositol-binding clathrin assembly protein isoform X1

    Conserved Domains (1) summary
    cl02544
    Location:1 → 234
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily
Nucleotide Protein
Heading Accession and Version

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