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si:dkey-79d12.5 si:dkey-79d12.5 [ Danio rerio (zebrafish) ]

Gene ID: 100538016, updated on 27-Mar-2024

Summary

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Official Symbol
si:dkey-79d12.5provided by ZNC
Official Full Name
si:dkey-79d12.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-131127-429
See related
Ensembl:ENSDARG00000040284 AllianceGenome:ZFIN:ZDB-GENE-131127-429
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be involved in negative regulation of cell population proliferation and negative regulation of mitotic cell cycle. Predicted to be active in cytoplasm and nucleus. Orthologous to human BTG3 (BTG anti-proliferation factor 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:dkey-79d12.5 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (24818737..24832129, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (24905909..24917156, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene si:dkey-79d12.4 Neighboring gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 Neighboring gene uncharacterized LOC110437987 Neighboring gene microRNA let7d-1 Neighboring gene microRNA 125a-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in negative regulation of cell population proliferation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
maternal B9.15 protein-like; protein BTG3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    24818737..24832129 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003200187.5 → XP_003200235.2  maternal B9.15 protein-like isoform X1

    UniProtKB/TrEMBL
    A0A8M1RJ53, E7F2Z6
    Related
    ENSDARP00000129242.1, ENSDART00000153731.2
    Conserved Domains (1) summary
    pfam07742
    Location:1 → 115
    BTG; BTG family

  2. XM_021466913.1 → XP_021322588.1  protein BTG3-like isoform X2

    UniProtKB/TrEMBL
    A0A8M9P8B7
    Conserved Domains (1) summary
    cl15439
    Location:1 → 39
    BTG; BTG family
Nucleotide Protein Strain
Heading Accession and Version

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