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gpr179 G protein-coupled receptor 179 [ Danio rerio (zebrafish) ]

Gene ID: 100537469, updated on 11-Apr-2024

Summary

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Official Symbol
gpr179provided by ZNC
Official Full Name
G protein-coupled receptor 179provided by ZNC
Primary source
ZFIN:ZDB-GENE-120229-1
See related
Ensembl:ENSDARG00000102310 AllianceGenome:ZFIN:ZDB-GENE-120229-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-156l18.8
Summary
Predicted to enable G protein-coupled receptor activity. Acts upstream of or within visual perception. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Used to study congenital stationary night blindness 1E. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See gpr179 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (12052136..12094157)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (12071393..12108610)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene sp2 transcription factor Neighboring gene suppressor of cytokine signaling 7 Neighboring gene mitochondrial ribosomal protein L45 Neighboring gene aminopeptidase puromycin sensitive

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. GPR179 is required for depolarizing bipolar cell function and is mutated in autosomal-recessive complete congenital stationary night blindness. Peachey NS, et al. Am J Hum Genet, 2012 Feb 10. PMID 22325362, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within visual perception IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
probable G-protein coupled receptor 158; probable G-protein coupled receptor 179

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    12052136..12094157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479749.1 → XP_021335424.1  probable G-protein coupled receptor 158 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QDG0
    Related
    ENSDARP00000131928.1, ENSDART00000158479.2
    Conserved Domains (1) summary
    cd15293
    Location:405 → 661
    7tmC_GPR158-like; orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G protein-coupled receptors

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394803.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    162134..194297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472395.1 → XP_021328070.1  probable G-protein coupled receptor 158 isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q3L0
    Conserved Domains (1) summary
    cd15293
    Location:405 → 621
    7tmC_GPR158-like; orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G protein-coupled receptors

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394804.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    330..9940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472410.1 → XP_021328085.1  probable G-protein coupled receptor 179 isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q3M3

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395295.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    160762..201424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017358296.2 → XP_017213785.2  probable G-protein coupled receptor 158 isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z8Q9
    Conserved Domains (1) summary
    cd15293
    Location:405 → 661
    7tmC_GPR158-like; orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein
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