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GTF2A1L general transcription factor IIA, 1-like [ Gallus gallus (chicken) ]

Gene ID: 100534591, updated on 17-Aug-2024

Summary

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Symbol
GTF2A1Lprovided by CGNC
Full Name
general transcription factor IIA, 1-likeprovided by CGNC
Primary source
CGNC:6920
See related
Ensembl:ENSGALG00010017311
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GTF2A1L in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (7827145..7839134, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (7772275..7784223, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene follicle stimulating hormone receptor Neighboring gene uncharacterized LOC107052021 Neighboring gene luteinizing hormone/choriogonadotropin receptor Neighboring gene uncharacterized LOC112532054 Neighboring gene stonin 1 Neighboring gene EH domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A set of testis-specific novel genes collected from a collection of Korean Native Chicken ESTs. Shin JH, et al. Anim Genet, 2005 Aug. PMID 16026346
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TFIIA-alpha and beta-like factor
Names
general transcription factor IIA subunit 1 like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001204866.2 → NP_001191795.1  TFIIA-alpha and beta-like factor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000061
    UniProtKB/TrEMBL
    A0A8V0Z7I4
    Related
    ENSGALP00010024410.1, ENSGALT00010041741.1
    Conserved Domains (2) summary
    cd07976
    Location:436 → 493
    TFIIA_alpha_beta_like; Precursor of TFIIA alpha and beta subunits and similar proteins
    pfam03153
    Location:10 → 493
    TFIIA; Transcription factor IIA, alpha/beta subunit

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    7827145..7839134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015278015.4 → XP_015133501.1  TFIIA-alpha and beta-like factor isoform X3

    Conserved Domains (2) summary
    cd07976
    Location:282 → 339
    TFIIA_alpha_beta_like; Precursor of TFIIA alpha and beta subunits and similar proteins
    pfam03153
    Location:10 → 339
    TFIIA; Transcription factor IIA, alpha/beta subunit

  2. XM_015278014.4 → XP_015133500.1  TFIIA-alpha and beta-like factor isoform X2

    Conserved Domains (2) summary
    cd07976
    Location:306 → 363
    TFIIA_alpha_beta_like; Precursor of TFIIA alpha and beta subunits and similar proteins
    pfam03153
    Location:10 → 363
    TFIIA; Transcription factor IIA, alpha/beta subunit

  3. XM_040696680.2 → XP_040552614.1  TFIIA-alpha and beta-like factor isoform X1

    Conserved Domains (2) summary
    cd07976
    Location:331 → 388
    TFIIA_alpha_beta_like; Precursor of TFIIA alpha and beta subunits and similar proteins
    TIGR02813
    Location:126 → 259
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    7772275..7784223 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046912832.1 → XP_046768788.1  TFIIA-alpha and beta-like factor isoform X3

  2. XM_046912831.1 → XP_046768787.1  TFIIA-alpha and beta-like factor isoform X2

  3. XM_046912830.1 → XP_046768786.1  TFIIA-alpha and beta-like factor isoform X1

  4. XM_046912829.1 → XP_046768785.1  TFIIA-alpha and beta-like factor isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z7I4
Nucleotide Protein Strain
Heading Accession and Version

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