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sec24d SEC24 homolog D, COPII coat complex component [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100529193, updated on 8-Mar-2024

Summary

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Gene symbol
sec24d
Gene description
SEC24 homolog D, COPII coat complex component
See related
EnsemblRapid:ENSORLG00000004729
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See sec24d in Genome Data Viewer
Location:
chromosome: 18
Exon count:
24
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 18 NC_019876.2 (10324317..10346250)
102 previous assembly ASM31367v1 (GCF_000313675.1) 18 NC_019876.1 (10285366..10304155)

Chromosome 18 - NC_019876.2Genomic Context describing neighboring genes Neighboring gene myozenin-2 Neighboring gene synaptopodin 2 Neighboring gene potassium voltage-gated channel interacting protein 4a Neighboring gene uncharacterized LOC111949224 Neighboring gene adhesion G protein-coupled receptor A3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. sec24d encoding a component of COPII is essential for vertebra formation, revealed by the analysis of the medaka mutant, vbi. Ohisa S, et al. Dev Biol, 2010 Jun 1. PMID 20346938
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec24D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201520.1 → NP_001188449.1  protein transport protein Sec24D

    See identical proteins and their annotated locations for NP_001188449.1

    Status: PROVISIONAL

    Source sequence(s)
    AB546834
    UniProtKB/TrEMBL
    A0A3B3IHR2, D6RUX3
    Related
    ENSORLP00000043354.1, ENSORLT00000046626.2
    Conserved Domains (7) summary
    COG5028
    Location:206 → 1060
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
    cd01479
    Location:469 → 717
    Sec24-like; Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam00626
    Location:933 → 1006
    Gelsolin; Gelsolin repeat
    pfam03957
    Location:23 → 151
    Jun; Jun-like transcription factor
    pfam04810
    Location:392 → 427
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:817 → 913
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:718 → 802
    Sec23_BS; Sec23/Sec24 beta-sandwich domain

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019876.2 Reference ASM223467v1 Primary Assembly

    Range
    10324317..10346250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023965768.1 → XP_023821536.1  protein transport protein Sec24D isoform X1

    UniProtKB/TrEMBL
    A0A3B3IHR2
    Related
    ENSORLP00000075025.1, ENSORLT00000097969.1
    Conserved Domains (2) summary
    pfam09606
    Location:4 → 306
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl27110
    Location:226 → 1080
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
Nucleotide Protein
Heading Accession and Version

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