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hmox heme oxygenase [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528875, updated on 23-Nov-2023

Summary

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Gene symbol
hmox
Gene description
heme oxygenase
See related
Ensembl:ENSIPUG00000016729
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
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Genomic context

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Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 12 NC_030427.2 (10932387..10934633)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 12 NC_030427.1 (6430065..6432311)

Chromosome 12 - NC_030427.2Genomic Context describing neighboring genes Neighboring gene HMG box-containing protein 4 Neighboring gene heme oxygenase Neighboring gene heme oxygenase Neighboring gene target of Myb1 membrane trafficking protein Neighboring gene bone gamma-carboxyglutamate (gla) protein, like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme oxygenase (decyclizing) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heme catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heme oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heme oxygenase
NP_001188074.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201145.1 → NP_001188074.1  heme oxygenase

    See identical proteins and their annotated locations for NP_001188074.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588674
    UniProtKB/TrEMBL
    E3TE94
    Related
    ENSIPUP00000024748.1, ENSIPUT00000025780.1
    Conserved Domains (1) summary
    pfam01126
    Location:18 → 222
    Heme_oxygenase; Heme oxygenase

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030427.2 Reference Coco_2.0 Primary Assembly

    Range
    10932387..10934633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases