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cnot9 CCR4-NOT transcription complex subunit 9 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528548, updated on 8-Mar-2024

Summary

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Gene symbol
cnot9
Gene description
CCR4-NOT transcription complex subunit 9
See related
Ensembl:ENSIPUG00000008737
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
rcd1
Orthologs
human zebrafish all
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Genomic context

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See cnot9 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 27 NC_030442.2 (4125946..4130590, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 27 NC_030442.1 (14697460..14701899)

Chromosome 27 - NC_030442.2Genomic Context describing neighboring genes Neighboring gene SLX9 ribosome biogenesis factor Neighboring gene phospholipase C, delta 4a Neighboring gene formimidoyltransferase cyclodeaminase Neighboring gene myostatin a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 9
Names
cell differentiation protein rcd1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200818.1 → NP_001187747.1  CCR4-NOT transcription complex subunit 9

    See identical proteins and their annotated locations for NP_001187747.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589117
    UniProtKB/TrEMBL
    E3TFI3
    Related
    ENSIPUP00000012828.1, ENSIPUT00000013362.1
    Conserved Domains (1) summary
    pfam04078
    Location:31 → 280
    Rcd1; Cell differentiation family, Rcd1-like

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030442.2 Reference Coco_2.0 Primary Assembly

    Range
    4125946..4130590 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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