U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

mmd monocyte to macrophage differentiation-associated [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528510, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
mmd
Gene description
monocyte to macrophage differentiation-associated
See related
EnsemblRapid:ENSIPUG00020004510
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
paqrb
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 12 NC_030427.2 (31485443..31502431)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 12 NC_030427.1 (26085126..26101386)

Chromosome 12 - NC_030427.2Genomic Context describing neighboring genes Neighboring gene phosphatidylcholine transfer protein Neighboring gene transmembrane protein 100a Neighboring gene HLF transcription factor, PAR bZIP family member a Neighboring gene uncharacterized LOC128634059

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pore-forming activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
monocyte to macrophage differentiation factor
Names
monocyte to macrophage differentiation protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200780.1 → NP_001187709.1  monocyte to macrophage differentiation factor

    See identical proteins and their annotated locations for NP_001187709.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589066
    UniProtKB/TrEMBL
    E3TFD2
    Related
    ENSIPUP00020007214.1, ENSIPUT00020009154.1
    Conserved Domains (1) summary
    TIGR01065
    Location:27 → 227
    hlyIII; channel protein, hemolysin III family

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030427.2 Reference Coco_2.0 Primary Assembly

    Range
    31485443..31502431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053683889.1 → XP_053539864.1  monocyte to macrophage differentiation factor isoform X2

    UniProtKB/TrEMBL
    A0A9F7TJV0
    Related
    ENSIPUP00020007219.1, ENSIPUT00020009159.1

  2. XM_053683888.1 → XP_053539863.1  monocyte to macrophage differentiation factor isoform X1

    UniProtKB/TrEMBL
    A0A9F7RN62

  3. XM_017480638.3 → XP_017336127.1  monocyte to macrophage differentiation factor isoform X3

    UniProtKB/TrEMBL
    A0A2D0S064
    Related
    ENSIPUP00020007220.1, ENSIPUT00020009160.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.