U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

adat3 adenosine deaminase tRNA specific 3 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528189, updated on 20-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
adat3
Gene description
adenosine deaminase tRNA specific 3
See related
EnsemblRapid:ENSIPUG00020011039
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See adat3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 6 NC_030421.2 (5229110..5230541)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 6 NC_030421.1 (27100100..27101531, complement)

Chromosome 6 - NC_030421.2Genomic Context describing neighboring genes Neighboring gene asparagine synthetase domain containing 1 Neighboring gene uncharacterized LOC108266707 Neighboring gene ankyrin and armadillo repeat containing Neighboring gene O-sialoglycoprotein endopeptidase-like 1 Neighboring gene ORMDL sphingolipid biosynthesis regulator 1 Neighboring gene PMS1 homolog 1, mismatch repair system component

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA-specific adenosine-34 deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable inactive tRNA-specific adenosine deaminase-like protein 3
Names
tRNA-specific adenosine deaminase-like protein 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200459.1 → NP_001187388.1  probable inactive tRNA-specific adenosine deaminase-like protein 3

    See identical proteins and their annotated locations for NP_001187388.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588623
    UniProtKB/TrEMBL
    E3TE43
    Related
    ENSIPUP00020021355.1, ENSIPUT00020025087.1
    Conserved Domains (1) summary
    COG0590
    Location:180 → 349
    TadA; tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030421.2 Reference Coco_2.0 Primary Assembly

    Range
    5229110..5230541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.