U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

psmd14 proteasome 26S subunit, non-ATPase 14 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528154, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
psmd14
Gene description
proteasome 26S subunit, non-ATPase 14
See related
Ensembl:ENSIPUG00000010063
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
psde
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See psmd14 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 10 NC_030425.2 (6202499..6219638)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 10 NC_030425.1 (23913028..23930131, complement)

Chromosome 10 - NC_030425.2Genomic Context describing neighboring genes Neighboring gene RNA binding motif, single stranded interacting protein 1a Neighboring gene uncharacterized LOC124628573 Neighboring gene T-box brain transcription factor 1a Neighboring gene solute carrier family 4 member 10a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome regulatory particle, lid subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
26S proteasome non-ATPase regulatory subunit 14
NP_001187353.1
XP_017332746.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200424.1 → NP_001187353.1  26S proteasome non-ATPase regulatory subunit 14

    See identical proteins and their annotated locations for NP_001187353.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588577
    UniProtKB/TrEMBL
    E3TDZ7
    Related
    ENSIPUP00000014829.1, ENSIPUT00000015451.1
    Conserved Domains (1) summary
    cd08069
    Location:11 → 276
    MPN_RPN11_CSN5; Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030425.2 Reference Coco_2.0 Primary Assembly

    Range
    6202499..6219638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017477257.3 → XP_017332746.1  26S proteasome non-ATPase regulatory subunit 14 isoform X1

    UniProtKB/TrEMBL
    A0A2D0RRF1
    Conserved Domains (1) summary
    cd08069
    Location:21 → 286
    MPN_RPN11_CSN5; Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.