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dhps deoxyhypusine synthase [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528141, updated on 20-Aug-2024

Summary

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Gene symbol
dhps
Gene description
deoxyhypusine synthase
See related
EnsemblRapid:ENSIPUG00020010590
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
dhys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 2 NC_030417.2 (25075047..25092943, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 2 NC_030417.1 (14387799..14405710)

Chromosome 2 - NC_030417.2Genomic Context describing neighboring genes Neighboring gene Na(+)/H(+) exchange regulatory cofactor NHE-RF2 Neighboring gene uncharacterized LOC108278284 Neighboring gene uncharacterized LOC108274916 Neighboring gene info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyhypusine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine modification to peptidyl-hypusine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deoxyhypusine synthase
NP_001187340.1
XP_017338260.1
XP_017338268.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200411.1 → NP_001187340.1  deoxyhypusine synthase

    See identical proteins and their annotated locations for NP_001187340.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588561
    UniProtKB/TrEMBL
    E3TDY1
    Related
    ENSIPUP00020020130.1, ENSIPUT00020023856.1
    Conserved Domains (1) summary
    pfam01916
    Location:41 → 328
    DS; Deoxyhypusine synthase

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030417.2 Reference Coco_2.0 Primary Assembly

    Range
    25075047..25092943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017482771.3 → XP_017338260.1  deoxyhypusine synthase isoform X1

    UniProtKB/TrEMBL
    A0A2D0S7Q7
    Related
    ENSIPUP00020020127.1, ENSIPUT00020023853.1

  2. XM_017482779.3 → XP_017338268.1  deoxyhypusine synthase isoform X1

    UniProtKB/TrEMBL
    A0A2D0S7Q7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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