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FHOD1 formin homology 2 domain containing 1 [ Sus scrofa (pig) ]

Gene ID: 100524867, updated on 8-Mar-2024

Summary

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Official Symbol
FHOD1provided by VGNC
Official Full Name
formin homology 2 domain containing 1provided by VGNC
Primary source
VGNC:VGNC:88131
See related
Ensembl:ENSSSCG00000026116
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in longissimus dorsi muscle (RPKM 27.4), lung (RPKM 22.8) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See FHOD1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (27867499..27883077, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (25107426..25111432, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene engulfment and cell motility 3 Neighboring gene microRNA mir-328 Neighboring gene Leucine-rich repeat-containing protein 29 Neighboring gene transmembrane protein 208 Neighboring gene solute carrier family 9 member A5 Neighboring gene uncharacterized LOC106510494 Neighboring gene pleckstrin homology and RhoGEF domain containing G4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament network formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cortical actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FH1/FH2 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    27867499..27883077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021094071.1 → XP_020949730.1  FH1/FH2 domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1UPI5
    Conserved Domains (2) summary
    pfam02181
    Location:636 → 1007
    FH2; Formin Homology 2 Domain
    cl25751
    Location:351 → 559
    DUF4045; Domain of unknown function (DUF4045)

  2. XM_013998259.2 → XP_013853713.2  FH1/FH2 domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A4X1UPI5
    Conserved Domains (2) summary
    pfam02181
    Location:610 → 981
    FH2; Formin Homology 2 Domain
    cl28087
    Location:367 → 533
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  3. XM_021094072.1 → XP_020949731.1  FH1/FH2 domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1UPI5
    Related
    ENSSSCP00000043589.3, ENSSSCT00000039790.3
    Conserved Domains (2) summary
    pfam02181
    Location:610 → 982
    FH2; Formin Homology 2 Domain
    cl28087
    Location:367 → 533
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]

  4. XM_021094070.1 → XP_020949729.1  FH1/FH2 domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1UPI5, A0A8W4F971
    Related
    ENSSSCP00000075871.1, ENSSSCT00000092387.1
    Conserved Domains (2) summary
    pfam02181
    Location:636 → 1008
    FH2; Formin Homology 2 Domain
    cl25751
    Location:351 → 559
    DUF4045; Domain of unknown function (DUF4045)

  5. XM_021094073.1 → XP_020949732.1  FH1/FH2 domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A4X1UPI5
    Conserved Domains (2) summary
    pfam02181
    Location:543 → 915
    FH2; Formin Homology 2 Domain
    cl25751
    Location:258 → 466
    DUF4045; Domain of unknown function (DUF4045)

  6. XM_013998258.2 → XP_013853712.2  FH1/FH2 domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UPI5, I3L8D0
    Related
    ENSSSCP00000044568.2, ENSSSCT00000046258.2
    Conserved Domains (2) summary
    pfam02181
    Location:517 → 889
    FH2; Formin Homology 2 Domain
    cl28087
    Location:274 → 440
    FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
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