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DPY19L2 dpy-19 like 2 [ Sus scrofa (pig) ]

Gene ID: 100524658, updated on 17-Aug-2024

Summary

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Official Symbol
DPY19L2provided by VGNC
Official Full Name
dpy-19 like 2provided by VGNC
Primary source
VGNC:VGNC:97967
See related
Ensembl:ENSSSCG00000016663
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
23
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 18 NC_010460.4 (38693951..38765943)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 18 NC_010460.3 (42524666..42597130)

Chromosome 18 - NC_010460.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102161969 Neighboring gene HERPUD family member 2 Neighboring gene T-box transcription factor 20 Neighboring gene dpy-19 like C-mannosyltransferase 1 Neighboring gene neuropeptide S receptor 1 Neighboring gene uncharacterized LOC110257625

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermatid development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L2
Names
probable C-mannosyltransferase DPY19L2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010460.4 Reference Sscrofa11.1 Primary Assembly

    Range
    38693951..38765943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003134795.4 → XP_003134843.2  probable C-mannosyltransferase DPY19L2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1W164, A0A8D0VRT2
    Related
    ENSSSCP00000017652.4, ENSSSCT00000018142.5
    Conserved Domains (1) summary
    pfam10034
    Location:230 → 871
    Dpy19; Q-cell neuroblast polarization

  2. XM_021078556.1 → XP_020934215.1  probable C-mannosyltransferase DPY19L2 isoform X3

    UniProtKB/TrEMBL
    A0A4X1W8C0, A0A8D0TG54
    Conserved Domains (1) summary
    pfam10034
    Location:230 → 847
    Dpy19; Q-cell neuroblast polarisation

  3. XM_021078557.1 → XP_020934216.1  probable C-mannosyltransferase DPY19L2 isoform X4

    UniProtKB/TrEMBL
    A0A4X1W6Z8, A0A8D0VRU0
    Conserved Domains (1) summary
    pfam10034
    Location:230 → 844
    Dpy19; Q-cell neuroblast polarisation

  4. XM_005657778.3 → XP_005657835.2  probable C-mannosyltransferase DPY19L2 isoform X2

    UniProtKB/TrEMBL
    A0A8D0VRT2
    Conserved Domains (1) summary
    pfam10034
    Location:230 → 851
    Dpy19; Q-cell neuroblast polarization

  5. XM_021078559.1 → XP_020934218.1  probable C-mannosyltransferase DPY19L2 isoform X5

    UniProtKB/TrEMBL
    A0A8D0VRT2, A0A8D1HZV6
    Conserved Domains (1) summary
    pfam10034
    Location:230 → 782
    Dpy19; Q-cell neuroblast polarisation

  6. XM_021078558.1 → XP_020934217.1  probable C-mannosyltransferase DPY19L2 isoform X5

    UniProtKB/TrEMBL
    A0A8D0VRT2, A0A8D1HZV6
    Conserved Domains (1) summary
    pfam10034
    Location:230 → 782
    Dpy19; Q-cell neuroblast polarisation

RNA

  1. XR_002340221.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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