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TM2D3 TM2 domain containing 3 [ Sus scrofa (pig) ]

Gene ID: 100523885, updated on 8-Mar-2024

Summary

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Official Symbol
TM2D3provided by VGNC
Official Full Name
TM2 domain containing 3provided by VGNC
Primary source
VGNC:VGNC:94029
See related
Ensembl:ENSSSCG00000005782
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 26.0), spleen (RPKM 6.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TM2D3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (145359693..145371218)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (311079780..311091270)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene ferritin light chain pseudogene Neighboring gene threonyl-tRNA synthetase 3 Neighboring gene proprotein convertase subtilisin/kexin type 6 Neighboring gene small nuclear ribonucleoprotein polypeptide A'

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
TM2 domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    145359693..145371218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005652477.2 → XP_005652534.1  TM2 domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A4X1U4Q8, A0A8D0KD82, F1RZ95
    Related
    ENSSSCP00000006196.2, ENSSSCT00000006358.5
    Conserved Domains (1) summary
    pfam05154
    Location:187 → 236
    TM2; TM2 domain

  2. XM_021098924.1 → XP_020954583.1  TM2 domain-containing protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A4X1U9U2, A0A5G2RM30, A0A8D1BHB5

  3. XM_003122300.5 → XP_003122348.1  TM2 domain-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A287BPT1, A0A4X1U956, A0A8D0KDB0
    Related
    ENSSSCP00000058521.1, ENSSSCT00000052782.1
    Conserved Domains (1) summary
    pfam05154
    Location:156 → 205
    TM2; TM2 domain
Nucleotide Protein
Heading Accession and Version

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