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SPMIP6 sperm microtubule inner protein 6 [ Sus scrofa (pig) ]

Gene ID: 100522632, updated on 17-Aug-2024

Summary

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Official Symbol
SPMIP6provided by VGNC
Official Full Name
sperm microtubule inner protein 6provided by VGNC
Primary source
VGNC:VGNC:95929
See related
Ensembl:ENSSSCG00000010980
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
C10H9orf24
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (32419965..32435622)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (36588942..36604343)

Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110255674 Neighboring gene dynein axonemal intermediate chain 1 Neighboring gene 40S ribosomal protein S27-like Neighboring gene family with sequence similarity 219 member A Neighboring gene myogenesis regulating glycosidase Neighboring gene nudix hydrolase 2 Neighboring gene kinesin family member 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in manchette IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatid-specific manchette-related protein 1
Names
chromosome 10 C9orf24 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

    Range
    32419965..32435622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021064685.1 → XP_020920344.1  spermatid-specific manchette-related protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1UPN9, A0A5G2QP01, A0A8D0XAU6, A0A8D1R1W0, A0A8D1YLF2
    Related
    ENSSSCP00000063808.1, ENSSSCT00000067512.2
    Conserved Domains (1) summary
    pfam15181
    Location:1 → 249
    SMRP1; Spermatid-specific manchette-related protein 1

  2. XM_021064684.1 → XP_020920343.1  spermatid-specific manchette-related protein 1 isoform X2

    Conserved Domains (1) summary
    pfam15181
    Location:1 → 114
    SMRP1; Spermatid-specific manchette-related protein 1

  3. XM_021064682.1 → XP_020920341.1  spermatid-specific manchette-related protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1UUH5, A0A8D0X8E1, A0A8D1E5H9, F1SEB3
    Related
    ENSSSCP00000011709.4, ENSSSCT00000012017.5
    Conserved Domains (1) summary
    pfam15181
    Location:1 → 114
    SMRP1; Spermatid-specific manchette-related protein 1
Nucleotide Protein
Heading Accession and Version

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