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SPG11 SPG11 vesicle trafficking associated, spatacsin [ Sus scrofa (pig) ]

Gene ID: 100522412, updated on 17-Aug-2024

Summary

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Official Symbol
SPG11provided by VGNC
Official Full Name
SPG11 vesicle trafficking associated, spatacsinprovided by VGNC
Primary source
VGNC:VGNC:93402
See related
Ensembl:ENSSSCG00000004684 Ensembl:ENSSSCG00000061749
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 9.3), spleen (RPKM 6.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
58
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (126890464..126998014)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003538860.2 (12132..18524, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110261210 Neighboring gene beta-2-microglobulin Neighboring gene eukaryotic translation initiation factor 3 subunit J Neighboring gene CTD small phosphatase like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axo-dendritic transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axon extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spatacsin
Names
SPG11, spatacsin vesicle trafficking associated
protein associated with topoisomerase II homolog 2
spastic paraplegia 11 (autosomal recessive)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    126890464..126998014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021096475.1 → XP_020952134.1  spatacsin isoform X10

    UniProtKB/TrEMBL
    A0A8D1TXN0
    Conserved Domains (1) summary
    cl25764
    Location:284 → 418
    PAT1; Topoisomerase II-associated protein PAT1

  2. XM_021096483.1 → XP_020952142.1  spatacsin isoform X11

    UniProtKB/TrEMBL
    A0A8D1TXN0
    Related
    ENSSSCP00000074379.1, ENSSSCT00000052986.3
    Conserved Domains (1) summary
    cl25764
    Location:284 → 418
    PAT1; Topoisomerase II-associated protein PAT1

  3. XM_021096462.1 → XP_020952121.1  spatacsin isoform X8

    Conserved Domains (2) summary
    cl25764
    Location:284 → 418
    PAT1; Topoisomerase II-associated protein PAT1
    cl28172
    Location:1079 → 1256
    Mollicu_LP; MOLPALP family lipoprotein

  4. XM_021096469.1 → XP_020952128.1  spatacsin isoform X9

    Conserved Domains (2) summary
    cl25764
    Location:284 → 418
    PAT1; Topoisomerase II-associated protein PAT1
    cl28172
    Location:1079 → 1256
    Mollicu_LP; MOLPALP family lipoprotein

  5. XM_021096391.1 → XP_020952050.1  spatacsin isoform X1

    UniProtKB/TrEMBL
    A0A4X1V9M1
    Conserved Domains (3) summary
    pfam14649
    Location:2571 → 2863
    Spatacsin_C; Spatacsin C-terminus
    cl25764
    Location:284 → 418
    PAT1; Topoisomerase II-associated protein PAT1
    cl28172
    Location:1079 → 1256
    Mollicu_LP; MOLPALP family lipoprotein

  6. XM_021096419.1 → XP_020952078.1  spatacsin isoform X2

    UniProtKB/TrEMBL
    A0A4X1V9M1
    Conserved Domains (3) summary
    pfam14649
    Location:2567 → 2859
    Spatacsin_C; Spatacsin C-terminus
    cl25764
    Location:284 → 414
    PAT1; Topoisomerase II-associated protein PAT1
    cl28172
    Location:1075 → 1252
    Mollicu_LP; MOLPALP family lipoprotein

  7. XM_021096427.1 → XP_020952086.1  spatacsin isoform X4

    UniProtKB/TrEMBL
    A0A4X1V9M1
    Conserved Domains (2) summary
    pfam14649
    Location:2553 → 2845
    Spatacsin_C; Spatacsin C-terminus
    cl28172
    Location:1061 → 1238
    Mollicu_LP; MOLPALP family lipoprotein

  8. XM_021096441.1 → XP_020952100.1  spatacsin isoform X6

    UniProtKB/TrEMBL
    A0A4X1V9M1
    Conserved Domains (2) summary
    pfam14649
    Location:2480 → 2772
    Spatacsin_C; Spatacsin C-terminus
    cl28172
    Location:988 → 1165
    Mollicu_LP; MOLPALP family lipoprotein

  9. XM_021096425.1 → XP_020952084.1  spatacsin isoform X3

    UniProtKB/TrEMBL
    A0A4X1V9M1
    Conserved Domains (3) summary
    pfam14649
    Location:2560 → 2852
    Spatacsin_C; Spatacsin C-terminus
    cl25764
    Location:273 → 407
    PAT1; Topoisomerase II-associated protein PAT1
    cl28172
    Location:1068 → 1245
    Mollicu_LP; MOLPALP family lipoprotein

  10. XM_021096435.1 → XP_020952094.1  spatacsin isoform X5

    UniProtKB/TrEMBL
    A0A4X1V9M1
    Conserved Domains (3) summary
    pfam14649
    Location:2533 → 2825
    Spatacsin_C; Spatacsin C-terminus
    cl25764
    Location:246 → 380
    PAT1; Topoisomerase II-associated protein PAT1
    cl28172
    Location:1041 → 1218
    Mollicu_LP; MOLPALP family lipoprotein

  11. XM_021096401.1 → XP_020952060.1  spatacsin isoform X1

    UniProtKB/TrEMBL
    A0A4X1V9M1
    Conserved Domains (3) summary
    pfam14649
    Location:2571 → 2863
    Spatacsin_C; Spatacsin C-terminus
    cl25764
    Location:284 → 418
    PAT1; Topoisomerase II-associated protein PAT1
    cl28172
    Location:1079 → 1256
    Mollicu_LP; MOLPALP family lipoprotein

  12. XM_021096411.1 → XP_020952070.1  spatacsin isoform X1

    UniProtKB/TrEMBL
    A0A4X1V9M1
    Conserved Domains (3) summary
    pfam14649
    Location:2571 → 2863
    Spatacsin_C; Spatacsin C-terminus
    cl25764
    Location:284 → 418
    PAT1; Topoisomerase II-associated protein PAT1
    cl28172
    Location:1079 → 1256
    Mollicu_LP; MOLPALP family lipoprotein

  13. XM_021096453.1 → XP_020952112.1  spatacsin isoform X7

    UniProtKB/TrEMBL
    I3LFC3
    Related
    ENSSSCP00000022763.3, ENSSSCT00000028050.4
    Conserved Domains (2) summary
    pfam14649
    Location:2155 → 2447
    Spatacsin_C; Spatacsin C-terminus
    cl28172
    Location:663 → 840
    Mollicu_LP; MOLPALP family lipoprotein

RNA

  1. XR_002345138.1 RNA Sequence

  2. XR_002345136.1 RNA Sequence

Nucleotide Protein
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