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MRPS27 mitochondrial ribosomal protein S27 [ Sus scrofa (pig) ]

Gene ID: 100519229, updated on 8-Mar-2024

Summary

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Official Symbol
MRPS27provided by VGNC
Official Full Name
mitochondrial ribosomal protein S27provided by VGNC
Primary source
VGNC:VGNC:110668
See related
Ensembl:ENSSSCG00000023818
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 22.5), heart (RPKM 18.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MRPS27 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (48509064..48642571, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (52497270..52593611, complement)

Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257309 Neighboring gene 60S ribosomal protein L12 pseudogene Neighboring gene uncharacterized LOC110257304 Neighboring gene microtubule associated protein 1B Neighboring gene pentatricopeptide repeat domain 2 Neighboring gene zinc finger protein 366 Neighboring gene H2B.L histone variant 1 Neighboring gene transportin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
28S ribosomal protein S27, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

    Range
    48509064..48642571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021076728.1 → XP_020932387.1  28S ribosomal protein S27, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A4X1UGK4, A0A8D0I6N3, A0A8D1A485
    Related
    ENSSSCP00000024423.4, ENSSSCT00000022648.4
    Conserved Domains (2) summary
    sd00004
    Location:141 → 175
    PPR; PPR repeat [structural motif]
    pfam10037
    Location:41 → 452
    MRP-S27; Mitochondrial 28S ribosomal protein S27

  2. XM_021076729.1 → XP_020932388.1  28S ribosomal protein S27, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8D1IHI1
    Related
    ENSSSCP00000060548.1, ENSSSCT00000089086.2
    Conserved Domains (2) summary
    sd00004
    Location:125 → 149
    PPR; PPR repeat [structural motif]
    pfam10037
    Location:1 → 426
    MRP-S27; Mitochondrial 28S ribosomal protein S27
Nucleotide Protein
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