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CILP2 cartilage intermediate layer protein 2 [ Sus scrofa (pig) ]

Gene ID: 100518061, updated on 17-Aug-2024

Summary

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Official Symbol
CILP2provided by VGNC
Official Full Name
cartilage intermediate layer protein 2provided by VGNC
Primary source
VGNC:VGNC:86704
See related
Ensembl:ENSSSCG00000013934
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in psoas major muscle (RPKM 1.3), lung (RPKM 1.1) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (58383568..58391973, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (58306042..58314435)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene lysophosphatidic acid receptor 2 Neighboring gene PBX homeobox 4 Neighboring gene YjeF N-terminal domain containing 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit A13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
cartilage intermediate layer protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    58383568..58391973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013987500.2 → XP_013842954.1  cartilage intermediate layer protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8D1AJD5, F1S6Q3
    Conserved Domains (5) summary
    smart00408
    Location:236 → 296
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:149 → 197
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:228 → 307
    IG_like; Immunoglobulin like
    pfam13330
    Location:58 → 143
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13715
    Location:405 → 456
    CarbopepD_reg_2; CarboxypepD_reg-like domain

  2. XM_003123570.4 → XP_003123618.1  cartilage intermediate layer protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A480DH83, A0A4X1U4H9, A0A8D1AJD5, F1S6Q3
    Related
    ENSSSCP00000014814.3, ENSSSCT00000015220.4
    Conserved Domains (6) summary
    smart00408
    Location:307 → 367
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:149 → 197
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:299 → 378
    IG_like; Immunoglobulin like
    pfam13330
    Location:58 → 143
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13620
    Location:213 → 266
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
    pfam13715
    Location:476 → 527
    CarbopepD_reg_2; CarboxypepD_reg-like domain
Nucleotide Protein
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