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SYVN1 synoviolin 1 [ Sus scrofa (pig) ]

Gene ID: 100514334, updated on 8-Mar-2024

Summary

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Official Symbol
SYVN1provided by VGNC
Official Full Name
synoviolin 1provided by VGNC
Primary source
VGNC:VGNC:93695
See related
Ensembl:ENSSSCG00000039740
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 25.8), ovary (RPKM 21.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SYVN1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (7059444..7066617)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (6191492..6198640)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 20 Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene calpain 1 Neighboring gene speedy/RINGO cell cycle regulator family member C Neighboring gene mitochondrial ribosomal protein L49 Neighboring gene zinc finger HIT-type containing 2 Neighboring gene FAU ubiquitin like and ribosomal protein S30 fusion

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase synoviolin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    7059444..7066617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003122541.4 → XP_003122589.1  E3 ubiquitin-protein ligase synoviolin isoform X2

    UniProtKB/TrEMBL
    A0A481CKD3, A0A4X1UZV6
    Related
    ENSSSCP00000060464.2, ENSSSCT00000086035.2
    Conserved Domains (2) summary
    cl25864
    Location:526 → 599
    SPATA3; Spermatogenesis-associated protein 3 family
    cl26329
    Location:10 → 333
    zf-rbx1; RING-H2 zinc finger domain

  2. XM_021082863.1 → XP_020938522.1  E3 ubiquitin-protein ligase synoviolin isoform X1

    UniProtKB/TrEMBL
    A0A8D0TGV3
    Conserved Domains (2) summary
    cl26329
    Location:10 → 333
    zf-rbx1; RING-H2 zinc finger domain
    cl28120
    Location:550 → 623
    Herpes_gI; Alphaherpesvirus glycoprotein I

  3. XM_021082864.1 → XP_020938523.1  E3 ubiquitin-protein ligase synoviolin isoform X2

    UniProtKB/TrEMBL
    A0A481CKD3, A0A4X1UZV6
    Related
    ENSSSCP00000053517.2, ENSSSCT00000059956.3
    Conserved Domains (2) summary
    cl25864
    Location:526 → 599
    SPATA3; Spermatogenesis-associated protein 3 family
    cl26329
    Location:10 → 333
    zf-rbx1; RING-H2 zinc finger domain
Nucleotide Protein
Heading Accession and Version

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