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VEPH1 ventricular zone expressed PH domain containing 1 [ Sus scrofa (pig) ]

Gene ID: 100512989, updated on 8-Mar-2024

Summary

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Official Symbol
VEPH1provided by VGNC
Official Full Name
ventricular zone expressed PH domain containing 1provided by VGNC
Primary source
VGNC:VGNC:94817
See related
Ensembl:ENSSSCG00000011726
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 21.8), spleen (RPKM 17.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See VEPH1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
29
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (96986322..97366206, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (105237282..105490179, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102162136 Neighboring gene uncharacterized LOC102162693 Neighboring gene uncharacterized LOC106505727 Neighboring gene cyclin L1 Neighboring gene THAP domain-containing protein 7 pseudogene Neighboring gene pentraxin 3 Neighboring gene uncharacterized LOC110256535 Neighboring gene tubulin alpha-1B chain-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-5-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ventricular zone-expressed PH domain-containing protein homolog 1
Names
ventricular zone expressed PH domain homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    96986322..97366206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021069710.1 → XP_020925369.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SIR4
    Conserved Domains (1) summary
    cl17171
    Location:716 → 757
    PH-like; Pleckstrin homology-like domain

  2. XM_021069713.1 → XP_020925372.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SIR4
    Conserved Domains (1) summary
    cl17171
    Location:716 → 757
    PH-like; Pleckstrin homology-like domain

  3. XM_021069715.1 → XP_020925374.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SIR4
    Conserved Domains (1) summary
    cl17171
    Location:716 → 757
    PH-like; Pleckstrin homology-like domain

  4. XM_021069718.1 → XP_020925377.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SIR4
    Conserved Domains (1) summary
    cl17171
    Location:716 → 757
    PH-like; Pleckstrin homology-like domain

  5. XM_021069714.1 → XP_020925373.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SIR4
    Conserved Domains (1) summary
    cl17171
    Location:716 → 757
    PH-like; Pleckstrin homology-like domain

  6. XM_021069716.1 → XP_020925375.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SIR4
    Conserved Domains (1) summary
    cl17171
    Location:716 → 757
    PH-like; Pleckstrin homology-like domain

  7. XM_021069709.1 → XP_020925368.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SIR4
    Conserved Domains (1) summary
    cl17171
    Location:716 → 757
    PH-like; Pleckstrin homology-like domain

  8. XM_021069712.1 → XP_020925371.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SIR4
    Conserved Domains (1) summary
    cl17171
    Location:716 → 757
    PH-like; Pleckstrin homology-like domain

  9. XM_021069711.1 → XP_020925370.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SIR4
    Conserved Domains (1) summary
    cl17171
    Location:716 → 757
    PH-like; Pleckstrin homology-like domain

  10. XM_021069719.1 → XP_020925378.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SIR4
    Conserved Domains (1) summary
    cl17171
    Location:716 → 757
    PH-like; Pleckstrin homology-like domain

  11. XM_021069720.1 → XP_020925379.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1SJL6, A0A5G2QT95, A0A8D0LNJ3, A0A8D0VID8
    Related
    ENSSSCP00000068146.1, ENSSSCT00000068766.1
    Conserved Domains (1) summary
    cd01264
    Location:716 → 824
    PH_MELT_VEPH1; Melted pleckstrin homology (PH) domain

  12. XM_021069721.1 → XP_020925380.1  ventricular zone-expressed PH domain-containing protein homolog 1 isoform X3

    UniProtKB/TrEMBL
    A0A8D0JBT8, A0A8D0VIK1, F1SJM1
    Related
    ENSSSCP00000012496.4, ENSSSCT00000012836.5
    Conserved Domains (1) summary
    cd01264
    Location:644 → 752
    PH_MELT_VEPH1; Melted pleckstrin homology (PH) domain
Nucleotide Protein
Heading Accession and Version

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