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SF3B3 splicing factor 3b subunit 3 [ Sus scrofa (pig) ]

Gene ID: 100512659, updated on 8-Mar-2024

Summary

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Official Symbol
SF3B3provided by VGNC
Official Full Name
splicing factor 3b subunit 3provided by VGNC
Primary source
VGNC:VGNC:92772
See related
Ensembl:ENSSSCG00000025323
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 51.8), spleen (RPKM 28.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SF3B3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
28
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (13524519..13578681)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (13479647..13484140)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene fucose kinase Neighboring gene component of oligomeric golgi complex 4 Neighboring gene interleukin 34 Neighboring gene dnaJ homolog subfamily C member 7-like Neighboring gene MTSS I-BAR domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 3
Names
splicing factor 3b, subunit 3, 130kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    13524519..13578681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021093803.1 → XP_020949462.1  splicing factor 3B subunit 3

    UniProtKB/TrEMBL
    A0A480V5Z8, A0A8D1KZJ0, A0A8D1ZRL6, I3LSJ4
    Related
    ENSSSCP00000027087.3, ENSSSCT00000030710.4
    Conserved Domains (2) summary
    pfam03178
    Location:863 → 1182
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:76 → 592
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

  2. XM_021093804.1 → XP_020949463.1  splicing factor 3B subunit 3

    UniProtKB/TrEMBL
    A0A480V5Z8, A0A8D1KZJ0, A0A8D1ZRL6, I3LSJ4
    Conserved Domains (2) summary
    pfam03178
    Location:863 → 1182
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:76 → 592
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

  3. XM_021093805.1 → XP_020949464.1  splicing factor 3B subunit 3

    UniProtKB/TrEMBL
    A0A480V5Z8, A0A8D1KZJ0, A0A8D1ZRL6, I3LSJ4
    Conserved Domains (2) summary
    pfam03178
    Location:863 → 1182
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:76 → 592
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
Nucleotide Protein
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