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GSAP gamma-secretase activating protein [ Sus scrofa (pig) ]

Gene ID: 100512622, updated on 17-Aug-2024

Summary

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Official Symbol
GSAPprovided by VGNC
Official Full Name
gamma-secretase activating proteinprovided by VGNC
Primary source
VGNC:VGNC:108589
See related
Ensembl:ENSSSCG00000036113
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
PION
Expression
Broad expression in spleen (RPKM 14.0), lung (RPKM 12.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See GSAP in Genome Data Viewer
Location:
chromosome: 9
Exon count:
31
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (102694846..102785208)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (113150670..113180218, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102167692 Neighboring gene protein tyrosine phosphatase non-receptor type 12 Neighboring gene uncharacterized LOC102167907 Neighboring gene uncharacterized LOC110262246 Neighboring gene uncharacterized LOC110262247 Neighboring gene coiled-coil domain containing 146 Neighboring gene fibrinogen like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of amyloid-beta formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: gamma-secretase-activating protein
Names
pigeon homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    102694846..102785208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021102559.1 → XP_020958218.1  LOW QUALITY PROTEIN: gamma-secretase-activating protein

    UniProtKB/TrEMBL
    A0A8D1WI24
    Related
    ENSSSCP00000073655.1, ENSSSCT00000073342.1
    Conserved Domains (2) summary
    pfam05565
    Location:547 → 628
    Sipho_Gp157; Siphovirus Gp157
    pfam14959
    Location:639 → 746
    GSAP-16; gamma-Secretase-activating protein C-term
Nucleotide Protein
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