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LOC100512568 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [ Sus scrofa (pig) ]

Gene ID: 100512568, updated on 11-Apr-2024

Summary

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Gene symbol
LOC100512568
Gene description
rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1
See related
Ensembl:ENSSSCG00000017013
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
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Genomic context

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See LOC100512568 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
1
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (55351616..55354642, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (59934769..59936157, complement)

Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106506530 Neighboring gene pantothenate kinase 3 Neighboring gene microRNA mir-103-1 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene WW and C2 domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H2AQ104 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in box C/D sno(s)RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Cajal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

    Range
    55351616..55354642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003134071.4 → XP_003134119.1  rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1

    UniProtKB/TrEMBL
    A0A8D0QFD1, A0A8D1XG61, F1RR91
    Related
    ENSSSCP00000018025.3, ENSSSCT00000018525.3
    Conserved Domains (1) summary
    PTZ00146
    Location:88 → 329
    PTZ00146; fibrillarin; Provisional
Nucleotide Protein
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