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CDHR1 cadherin related family member 1 [ Sus scrofa (pig) ]

Gene ID: 100512562, updated on 8-Mar-2024

Summary

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Official Symbol
CDHR1provided by VGNC
Official Full Name
cadherin related family member 1provided by VGNC
Primary source
VGNC:VGNC:86489
See related
Ensembl:ENSSSCG00000010348
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in heart (RPKM 2.6), mixtures (RPKM 1.0) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CDHR1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (85429506..85455823)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (92234667..92259011)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene growth hormone inducible transmembrane protein Neighboring gene G protein-coupled receptor 15 ligand Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 2 Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-related family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    85429506..85455823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003133094.4 → XP_003133142.1  cadherin-related family member 1

    UniProtKB/TrEMBL
    A0A4X1SEX3, A0A5G2R7H5, A0A8D1F4Y2
    Related
    ENSSSCP00000011036.4, ENSSSCT00000011329.5
    Conserved Domains (1) summary
    cd11304
    Location:139 → 242
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein
Heading Accession and Version

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