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ACSM5 acyl-CoA synthetase medium chain family member 5 [ Sus scrofa (pig) ]

Gene ID: 100511318, updated on 8-Mar-2024

Summary

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Official Symbol
ACSM5provided by VGNC
Official Full Name
acyl-CoA synthetase medium chain family member 5provided by VGNC
Primary source
VGNC:VGNC:85036
See related
Ensembl:ENSSSCG00000026453
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in liver (RPKM 15.4), psoas major muscle (RPKM 6.6) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ACSM5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (25393121..25422551, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (26172262..26260399, complement)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene THUMP domain containing 1 Neighboring gene acyl-CoA synthetase medium-chain family member 4 Neighboring gene acyl-CoA synthetase medium chain family member 2B Neighboring gene protein disulfide isomerase like, testis expressed Neighboring gene uromodulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fatty-acyl-CoA synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acyl-coenzyme A synthetase ACSM5, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    25393121..25422551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003124563.6 → XP_003124611.3  acyl-coenzyme A synthetase ACSM5, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8D0M8F9, A0A8D2A1H2, I3L882
    Related
    ENSSSCP00000020240.2, ENSSSCT00000027749.4
    Conserved Domains (2) summary
    COG0365
    Location:49 → 576
    Acs; Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase [Lipid transport and metabolism]
    cl17068
    Location:49 → 577
    AFD_class_I; Adenylate forming domain, Class I superfamily

  2. XM_021086523.1 → XP_020942182.1  acyl-coenzyme A synthetase ACSM5, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A287A7W3, A0A8D0TSL4, A0A8D0YWD2
    Related
    ENSSSCP00000039901.2, ENSSSCT00000041222.3
    Conserved Domains (1) summary
    cl17068
    Location:49 → 529
    AFD_class_I; Adenylate forming domain, Class I superfamily

  3. XM_005662101.3 → XP_005662158.1  acyl-coenzyme A synthetase ACSM5, mitochondrial isoform X3

    See identical proteins and their annotated locations for XP_005662158.1

    UniProtKB/TrEMBL
    A0A8D1QKL8
    Conserved Domains (2) summary
    PRK07656
    Location:3 → 467
    PRK07656; long-chain-fatty-acid--CoA ligase; Validated
    cl17068
    Location:2 → 469
    AFD_class_I; Adenylate forming domain, Class I superfamily

  4. XM_005662100.3 → XP_005662157.1  acyl-coenzyme A synthetase ACSM5, mitochondrial isoform X3

    See identical proteins and their annotated locations for XP_005662157.1

    UniProtKB/TrEMBL
    A0A8D1QKL8
    Conserved Domains (2) summary
    PRK07656
    Location:3 → 467
    PRK07656; long-chain-fatty-acid--CoA ligase; Validated
    cl17068
    Location:2 → 469
    AFD_class_I; Adenylate forming domain, Class I superfamily
Nucleotide Protein
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