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LOC100506446 uncharacterized LOC100506446 [ Homo sapiens (human) ]

Gene ID: 100506446, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100506446
Gene description
uncharacterized LOC100506446
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC100506446 in Genome Data Viewer
Location:
14q21.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (49919861..49963032, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (44125047..44168219, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5711 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8327 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8328 Neighboring gene ARF GTPase 6 Neighboring gene RNA, U6 small nuclear 189, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:50384275-50384775 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:50390203-50390704 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8329 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:50398632-50399133 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8331 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5713 Neighboring gene Sharpr-MPRA regulatory region 12300 Neighboring gene uncharacterized LOC105370485 Neighboring gene microRNA 6076 Neighboring gene Sharpr-MPRA regulatory region 3168 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8332 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8333 Neighboring gene long intergenic non-protein coding RNA 1588

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    49919861..49963032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007064156.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    44125047..44168219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084697.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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