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sorcs3 sortilin-related VPS10 domain containing receptor 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100498333, updated on 7-Sep-2023

Summary

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Official Symbol
sorcs3provided by Xenbase
Official Full Name
sortilin-related VPS10 domain containing receptor 3provided by Xenbase
Primary source
Xenbase:XB-GENE-996343
See related
Ensembl:ENSXETG00000003625
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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Location:
chromosome: 7
Exon count:
27
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (1845212..2070335, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683640.1 (71050..125218, complement)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene alpha-2-macroglobulin Neighboring gene sortilin-related VPS10 domain containing receptor 1 Neighboring gene cilia and flagella associated protein 58 Neighboring gene inositol 1,4,5-trisphosphate receptor interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
VPS10 domain-containing receptor SorCS3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    1845212..2070335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031905700.1 → XP_031761560.1  VPS10 domain-containing receptor SorCS3

    UniProtKB/TrEMBL
    F6WAK4
    Related
    ENSXETP00000007825.4, ENSXETT00000007825.4
    Conserved Domains (2) summary
    smart00602
    Location:196 → 792
    VPS10; VPS10 domain
    pfam00801
    Location:807 → 876
    PKD; PKD domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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