eml6 echinoderm microtubule associated protein like 6 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: eml6provided by Xenbase
Official Full Name: echinoderm microtubule associated protein like 6provided by Xenbase
Primary source: Xenbase:XB-GENE-6039541
See related: Ensembl:ENSXETG00000015159
Gene type: protein coding
RefSeq status: MODEL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 5

Exon count:: 46

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	5	NC_030681.2 (24152026..24236208)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	5	NC_030681.1 (20059650..20142511)

Chromosome 5 - NC_030681.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables microtubule binding	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in microtubule	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: echinoderm microtubule-associated protein-like 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

24152026..24236208

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031903078.1 → XP_031758938.1 echinoderm microtubule-associated protein-like 6 isoform X1

UniProtKB/TrEMBL

A0A8J1JM33

Conserved Domains (6) summary

smart00320
Location:1967 → 2006

WD40; WD40 repeats

COG2319
Location:1441 → 1881

WD40; WD40 repeat [General function prediction only]

cd00200
Location:725 → 1066

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:64 → 103

7WD40; WD40 repeat [structural motif]

pfam03451
Location:671 → 714

HELP; HELP motif

cl29593
Location:57 → 353

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_031903079.1 → XP_031758939.1 echinoderm microtubule-associated protein-like 6 isoform X2

UniProtKB/TrEMBL

A0A6I8SY88

Related

ENSXETP00000100302.2, ENSXETT00000067093.2

Conserved Domains (6) summary

smart00320
Location:1923 → 1962

WD40; WD40 repeats

COG2319
Location:1397 → 1837

WD40; WD40 repeat [General function prediction only]

cd00200
Location:725 → 1066

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:64 → 103

7WD40; WD40 repeat [structural motif]

pfam03451
Location:671 → 714

HELP; HELP motif

cl29593
Location:57 → 353

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_018094140.2 → XP_017949629.1 echinoderm microtubule-associated protein-like 6 isoform X3

UniProtKB/TrEMBL

A0A6I8R324

Related

ENSXETP00000075685.1, ENSXETT00000067727.2

Conserved Domains (6) summary

smart00320
Location:1916 → 1955

WD40; WD40 repeats

COG2319
Location:1397 → 1830

WD40; WD40 repeat [General function prediction only]

cd00200
Location:725 → 1066

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:64 → 103

7WD40; WD40 repeat [structural motif]

pfam03451
Location:671 → 714

HELP; HELP motif

cl29593
Location:57 → 353

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...