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pdk1 pyruvate dehydrogenase kinase 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497838, updated on 18-Sep-2024

Summary

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Official Symbol
pdk1provided by Xenbase
Official Full Name
pyruvate dehydrogenase kinase 1provided by Xenbase
Primary source
Xenbase:XB-GENE-483609
See related
Ensembl:ENSXETG00000007526
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
PDKo1; PDKo3; xPDKo1; xPDKo3
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (67241963..67262413, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (62096791..62117083, complement)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 26-like Neighboring gene protein phosphatase 1 regulatory subunit 9A like Neighboring gene integrin subunit alpha 6 Neighboring gene distal-less homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 1, mitochondrial
Names
pyruvate dehydrogenase kinase, isozyme 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    67241963..67262413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002934618.5 → XP_002934664.2  pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 1, mitochondrial

    UniProtKB/TrEMBL
    A0A6I8T136, F6QN91
    Related
    ENSXETP00000016395.3, ENSXETT00000016395.3
    Conserved Domains (2) summary
    cd16929
    Location:200 → 366
    HATPase_PDK-like; Histidine kinase-like ATPase domain of pyruvate dehydrogenase kinase, branched-chain alpha-ketoacid dehydrogenase kinase and related domains
    pfam10436
    Location:32 → 196
    BCDHK_Adom3; Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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