U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pmfbp1 polyamine modulated factor 1 binding protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100496014, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
pmfbp1provided by Xenbase
Official Full Name
polyamine modulated factor 1 binding protein 1provided by Xenbase
Primary source
Xenbase:XB-GENE-1005436
See related
Ensembl:ENSXETG00000035562
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
stap
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See pmfbp1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
42
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (60116179..60198283, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (63144028..63226107)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene polycystic kidney disease protein 1-like 2 Neighboring gene dihydroorotate dehydrogenase (quinone) Neighboring gene DEAH-box helicase 38 Neighboring gene zinc finger homeobox 3 Neighboring gene uncharacterized LOC105947251 Neighboring gene uncharacterized LOC116410400

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
polyamine-modulated factor 1-binding protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    60116179..60198283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004913625.4 → XP_004913682.1  polyamine-modulated factor 1-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8J0QYD8
    Conserved Domains (2) summary
    COG1196
    Location:110 → 974
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01576
    Location:611 → 1686
    Myosin_tail_1; Myosin tail

  2. XM_004913624.4 → XP_004913681.1  polyamine-modulated factor 1-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J0R0H6
    Conserved Domains (2) summary
    TIGR02168
    Location:108 → 689
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam01576
    Location:412 → 1636
    Myosin_tail_1; Myosin tail

  3. XM_004913626.4 → XP_004913683.1  polyamine-modulated factor 1-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6I8QXG4
    Related
    ENSXETP00000078215.2, ENSXETT00000094177.2
    Conserved Domains (2) summary
    TIGR02168
    Location:85 → 666
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam01576
    Location:389 → 1613
    Myosin_tail_1; Myosin tail

  4. XM_002937579.5 → XP_002937625.2  polyamine-modulated factor 1-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8SJS7
    Related
    ENSXETP00000098513.2, ENSXETT00000081857.2
    Conserved Domains (2) summary
    COG1196
    Location:619 → 1450
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:1103 → 1801
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_004913627.4 → XP_004913684.1  polyamine-modulated factor 1-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A6I8QMS6
    Related
    ENSXETP00000070922.1, ENSXETT00000092083.2
    Conserved Domains (2) summary
    COG1196
    Location:48 → 912
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01576
    Location:549 → 1624
    Myosin_tail_1; Myosin tail

  6. XM_004913628.4 → XP_004913685.1  polyamine-modulated factor 1-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8J0R2Y4
    Conserved Domains (2) summary
    COG1196
    Location:3 → 867
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam01576
    Location:504 → 1579
    Myosin_tail_1; Myosin tail
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.