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LOC100493522 oocyte zinc finger protein XlCOF6-like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100493522, updated on 17-Aug-2024

Summary

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Official Symbol
LOC100493522provided by Xenbase
Official Full Name
oocyte zinc finger protein XlCOF6-likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-29081759
See related
Ensembl:ENSXETG00000041073
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (162453355..162459857, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683872.1 (36942..44693, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C5 gamma Neighboring gene ZFP1 zinc finger protein Neighboring gene oocyte zinc finger protein XlCOF8.4 Neighboring gene GPN-loop GTPase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within animal organ development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    162453355..162459857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002943587.5 → XP_002943633.3  oocyte zinc finger protein XlCOF6-like

    UniProtKB/TrEMBL
    A0A8J0QZH9
    Related
    ENSXETP00000103217.1, ENSXETT00000107172.1
    Conserved Domains (2) summary
    COG5048
    Location:367 → 818
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:511 → 531
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
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Gene LinkOut

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Molecular Biology Databases
Research Materials