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col5a2 collagen, type V, alpha 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100492754, updated on 17-Aug-2024

Summary

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Official Symbol
col5a2provided by Xenbase
Official Full Name
collagen, type V, alpha 2provided by Xenbase
Primary source
Xenbase:XB-GENE-6032476
See related
Ensembl:ENSXETG00000010784
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
54
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (48002721..48118499)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (39677783..39793267)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene WD repeat domain 75 Neighboring gene tumorhead Neighboring gene collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) Neighboring gene GULP PTB domain containing engulfment adaptor 1 Neighboring gene keratin-associated protein 10-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
collagen alpha-2(V) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    48002721..48118499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002931500.5 → XP_002931546.2  collagen alpha-2(V) chain

    UniProtKB/TrEMBL
    F6QGI3
    Related
    ENSXETP00000023577.4, ENSXETT00000023577.5
    Conserved Domains (4) summary
    pfam01391
    Location:695 → 752
    Collagen; Collagen triple helix repeat (20 copies)
    PRK07764
    Location:909 → 1105
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam00093
    Location:38 → 93
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1257 → 1491
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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