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bcdin3d BCDIN3 domain containing RNA methyltransfease [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100489630, updated on 17-Aug-2024

Summary

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Official Symbol
bcdin3dprovided by Xenbase
Official Full Name
BCDIN3 domain containing RNA methyltransfeaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-5859380
See related
Ensembl:ENSXETG00000040078
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (148254546..148257111, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (145384562..145387135, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene keratin 7 Neighboring gene keratin 80, type II Neighboring gene Fas apoptotic inhibitory molecule 2 Neighboring gene aquaporin-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA 5'-monophosphate methyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    148254546..148257111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002935731.5 → XP_002935777.1  RNA 5'-monophosphate methyltransferase

    UniProtKB/TrEMBL
    A0A6I8RVM3
    Related
    ENSXETP00000089169.1, ENSXETT00000074440.2
    Conserved Domains (2) summary
    pfam06859
    Location:146 → 251
    Bin3; Bicoid-interacting protein 3 (Bin3)
    cl17173
    Location:61 → 177
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials