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amigo2 adhesion molecule with Ig-like domain 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100489302, updated on 8-Mar-2024

Summary

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Official Symbol
amigo2provided by Xenbase
Official Full Name
adhesion molecule with Ig-like domain 2provided by Xenbase
Primary source
Xenbase:XB-GENE-6467798
See related
Ensembl:ENSXETG00000030376
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ali1; dega
Orthologs
human mouse all
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Genomic context

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See amigo2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (63509946..63514126)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (53970443..53974565)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105946836 Neighboring gene G-protein coupled receptor 61 Neighboring gene RNA polymerase II associated protein 3 Neighboring gene solute carrier family 38 member 4 Neighboring gene uncharacterized LOC116409738 Neighboring gene solute carrier family 38 member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
amphoterin-induced protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    63509946..63514126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004912966.3 → XP_004913023.1  amphoterin-induced protein 2

    See identical proteins and their annotated locations for XP_004913023.1

    UniProtKB/TrEMBL
    A0A6I8Q2X2, A0A803JIB2
    Related
    ENSXETP00000107659.1, ENSXETT00000122168.1
    Conserved Domains (5) summary
    sd00033
    Location:70 → 93
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:116 → 176
    LRR_8; Leucine rich repeat
    cd00096
    Location:325 → 327
    Ig; Ig strand C' [structural motif]
    NF033190
    Location:55 → 345
    inl_like_NEAT_1; NEAT domain-containing leucine-rich repeat protein
    cl11960
    Location:320 → 377
    Ig; Immunoglobulin domain

  2. XM_031898953.1 → XP_031754813.1  amphoterin-induced protein 2

    UniProtKB/TrEMBL
    A0A6I8Q2X2, A0A803JIB2
    Conserved Domains (5) summary
    sd00033
    Location:70 → 93
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:116 → 176
    LRR_8; Leucine rich repeat
    cd00096
    Location:325 → 327
    Ig; Ig strand C' [structural motif]
    NF033190
    Location:55 → 345
    inl_like_NEAT_1; NEAT domain-containing leucine-rich repeat protein
    cl11960
    Location:320 → 377
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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