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LOC100487439 oocyte zinc finger protein XlCOF6-like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100487439, updated on 7-Sep-2023

Summary

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Official Symbol
LOC100487439provided by Xenbase
Official Full Name
oocyte zinc finger protein XlCOF6-likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-29078771
See related
Ensembl:ENSXETG00000017455
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (213657900..213664122, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016684558.1 (23114..26598, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene RUN and SH3 domain containing 2 Neighboring gene provisional ortholog of tripartite motif containing 25 Neighboring gene CD209 antigen-like protein A Neighboring gene E3 ubiquitin-protein ligase TRIM7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF6-like; oocyte zinc finger protein XlCOF7.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    213657900..213664122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031894986.1 → XP_031750846.1  oocyte zinc finger protein XlCOF7.1-like isoform X2

    UniProtKB/TrEMBL
    A0A8J1J2B0
    Related
    ENSXETP00000118827.1, ENSXETT00000107856.1
    Conserved Domains (3) summary
    COG5048
    Location:426 → 861
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:660 → 680
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02581
    Location:95 → 111
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  2. XM_031894987.1 → XP_031750847.1  oocyte zinc finger protein XlCOF6-like isoform X3

    UniProtKB/TrEMBL
    A0A8J1IZ24
    Conserved Domains (3) summary
    COG5048
    Location:391 → 826
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:625 → 645
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02581
    Location:60 → 76
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  3. XM_031894985.1 → XP_031750845.1  oocyte zinc finger protein XlCOF7.1-like isoform X1

    UniProtKB/TrEMBL
    F6Z3V8
    Related
    ENSXETP00000037946.4, ENSXETT00000037946.4
    Conserved Domains (3) summary
    COG5048
    Location:457 → 892
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:691 → 711
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02581
    Location:126 → 142
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
Nucleotide Protein Strain
Heading Accession and Version

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