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bfsp2 beaded filament structural protein 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100486639, updated on 17-Aug-2024

Summary

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Official Symbol
bfsp2provided by Xenbase
Official Full Name
beaded filament structural protein 2provided by Xenbase
Primary source
Xenbase:XB-GENE-961572
See related
Ensembl:ENSXETG00000033786
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See bfsp2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (52657227..52676183, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (71532856..71550041)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase II binding protein 1 Neighboring gene CDV3 homolog Neighboring gene transmembrane protein 108 Neighboring gene intraflagellar transport 70a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
phakinin
Names
beaded filament structural protein 2, phakinin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    52657227..52676183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002937735.5 → XP_002937781.3  phakinin

    UniProtKB/TrEMBL
    A0A6I8PLI5
    Related
    ENSXETP00000059181.3, ENSXETT00000060324.3
    Conserved Domains (1) summary
    pfam00038
    Location:126 → 432
    Filament; Intermediate filament protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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