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TAT tyrosine aminotransferase [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100483605, updated on 8-Mar-2024

Summary

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Gene symbol
TAT
Gene description
tyrosine aminotransferase
Locus tag
PANDA_009824
See related
Ensembl:ENSAMEG00000002374
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See TAT in Genome Data Viewer
Location:
chromosome: 12
Exon count:
17
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 12 NC_048229.1 (67796097..67838055)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217745.1 (1003781..1015412, complement)

Chromosome 12 - NC_048229.1Genomic Context describing neighboring genes Neighboring gene PH domain and leucine rich repeat protein phosphatase 2 Neighboring gene MARVEL domain containing 3 Neighboring gene carbohydrate sulfotransferase 4 Neighboring gene ragulator complex protein LAMTOR5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-tyrosine:2-oxoglutarate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aromatic amino acid family catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine aminotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048229.1 Reference ASM200744v2 Primary Assembly

    Range
    67796097..67838055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019801514.2 → XP_019657073.1  tyrosine aminotransferase isoform X1

    UniProtKB/TrEMBL
    D2HFW4, G1L6I1

  2. XM_019801515.2 → XP_019657074.1  tyrosine aminotransferase isoform X2

  3. XM_002920948.4 → XP_002920994.1  tyrosine aminotransferase isoform X1

    See identical proteins and their annotated locations for XP_002920994.1

    UniProtKB/TrEMBL
    D2HFW4, G1L6I1
    Related
    ENSAMEP00000002496.2, ENSAMET00000002604.2
    Conserved Domains (3) summary
    cd00609
    Location:74 → 436
    AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
    TIGR01264
    Location:41 → 442
    tyr_amTase_E; tyrosine aminotransferase, eukaryotic
    pfam07706
    Location:1 → 40
    TAT_ubiq; Aminotransferase ubiquitination site
Nucleotide Protein
Heading Accession and Version

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