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VPS18 VPS18 core subunit of CORVET and HOPS complexes [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100482222, updated on 8-Mar-2024

Summary

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Gene symbol
VPS18
Gene description
VPS18 core subunit of CORVET and HOPS complexes
Locus tag
PANDA_001060
See related
Ensembl:ENSAMEG00000016855
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See VPS18 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 5 NC_048222.1 (63812216..63821197, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217306.1 (3393768..3402723, complement)

Chromosome 5 - NC_048222.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117802229 Neighboring gene delta like canonical Notch ligand 4 Neighboring gene ras homolog family member V Neighboring gene serine peptidase inhibitor, Kunitz type 1 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 14D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lysosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 18 homolog
Names
VPS18, CORVET/HOPS core subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048222.1 Reference ASM200744v2 Primary Assembly

    Range
    63812216..63821197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002913213.4 → XP_002913259.1  vacuolar protein sorting-associated protein 18 homolog isoform X1

    See identical proteins and their annotated locations for XP_002913259.1

    UniProtKB/TrEMBL
    D2GW94
    Related
    ENSAMEP00000017802.1, ENSAMET00000018527.2
    Conserved Domains (3) summary
    smart00299
    Location:644 → 768
    CLH; Clathrin heavy chain repeat homology
    pfam00637
    Location:638 → 769
    Clathrin; Region in Clathrin and VPS
    pfam05131
    Location:291 → 434
    Pep3_Vps18; Pep3/Vps18/deep orange family

  2. XM_034661141.1 → XP_034517032.1  vacuolar protein sorting-associated protein 18 homolog isoform X2

Nucleotide Protein
Heading Accession and Version

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