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ABCD1 ATP binding cassette subfamily D member 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100477511, updated on 11-Apr-2024

Summary

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Gene symbol
ABCD1
Gene description
ATP binding cassette subfamily D member 1
Locus tag
PANDA_019220
See related
Ensembl:ENSAMEG00000008692
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
11
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) X NC_048238.1 (111003943..111023285)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218976.1 (10093..29386, complement)

Chromosome X - NC_048238.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 member 8 Neighboring gene B cell receptor associated protein 31 Neighboring gene U2 spliceosomal RNA Neighboring gene plexin B3 Neighboring gene SRSF protein kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables long-chain fatty acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty acid import into peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peroxisome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family D member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048238.1 Reference ASM200744v2 Primary Assembly

    Range
    111003943..111023285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019809771.2 → XP_019665330.1  ATP-binding cassette sub-family D member 1 isoform X2

    UniProtKB/TrEMBL
    D2I1N5

  2. XM_002929081.4 → XP_002929127.1  ATP-binding cassette sub-family D member 1 isoform X1

    UniProtKB/TrEMBL
    D2I1N5, G1LQ34
    Related
    ENSAMEP00000009164.2, ENSAMET00000009556.2
    Conserved Domains (3) summary
    cd03223
    Location:474 → 679
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    TIGR00954
    Location:1 → 681
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein
    pfam06472
    Location:67 → 352
    ABC_membrane_2; ABC transporter transmembrane region 2
Nucleotide Protein
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