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LRRC49 leucine rich repeat containing 49 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100477330, updated on 8-Mar-2024

Summary

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Gene symbol
LRRC49
Gene description
leucine rich repeat containing 49
Locus tag
PANDA_011332
See related
Ensembl:ENSAMEG00000008861
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 5 NC_048222.1 (37241518..37396512, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217857.1 (726690..880075, complement)

Chromosome 5 - NC_048222.1Genomic Context describing neighboring genes Neighboring gene thrombospondin type-1 domain-containing protein 4-like Neighboring gene uncharacterized LOC109490097 Neighboring gene THAP domain containing 10 Neighboring gene La ribonucleoprotein 6, translational regulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 49

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048222.1 Reference ASM200744v2 Primary Assembly

    Range
    37241518..37396512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034660736.1 → XP_034516627.1  leucine-rich repeat-containing protein 49 isoform X4

    UniProtKB/TrEMBL
    D2HJ74
    Related
    ENSAMEP00000009350.2, ENSAMET00000009750.2

  2. XM_011228817.3 → XP_011227119.1  leucine-rich repeat-containing protein 49 isoform X2

    UniProtKB/TrEMBL
    A0A7N5JTN2, D2HJ74
    Related
    ENSAMEP00000030182.1, ENSAMET00000037645.1
    Conserved Domains (5) summary
    cd00116
    Location:188 → 305
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:141 → 160
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:159 → 200
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:249 → 303
    LRR_8; Leucine rich repeat
    pfam17058
    Location:2 → 127
    MBR1; Mitochondrial biogenesis regulation protein 1

  3. XM_002922323.4 → XP_002922369.1  leucine-rich repeat-containing protein 49 isoform X3

    UniProtKB/TrEMBL
    D2HJ74
    Conserved Domains (4) summary
    cd00116
    Location:141 → 258
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:94 → 113
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:112 → 153
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:202 → 256
    LRR_8; Leucine rich repeat

  4. XM_011228815.3 → XP_011227117.1  leucine-rich repeat-containing protein 49 isoform X1

    UniProtKB/TrEMBL
    A0A7N5JQK1, D2HJ74
    Related
    ENSAMEP00000026912.1, ENSAMET00000026391.1
    Conserved Domains (4) summary
    cd00116
    Location:207 → 324
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:160 → 179
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:178 → 219
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:268 → 322
    LRR_8; Leucine rich repeat
Nucleotide Protein
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