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ATP6V1C1 ATPase H+ transporting V1 subunit C1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100467928, updated on 8-Mar-2024

Summary

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Gene symbol
ATP6V1C1
Gene description
ATPase H+ transporting V1 subunit C1
Locus tag
PANDA_011625
See related
Ensembl:ENSAMEG00000014655
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See ATP6V1C1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 9 NC_048226.1 (70237958..70278854)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217877.1 (119032..159534, complement)

Chromosome 9 - NC_048226.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117803782 Neighboring gene 28S ribosomal protein S24, mitochondrial-like Neighboring gene uncharacterized LOC117803784 Neighboring gene antizyme inhibitor 1 Neighboring gene uncharacterized LOC109490131 Neighboring gene BAALC binder of MAP3K1 and KLF4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of vacuolar proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit C 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048226.1 Reference ASM200744v2 Primary Assembly

    Range
    70237958..70278854
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002922602.4 → XP_002922648.1  V-type proton ATPase subunit C 1

    See identical proteins and their annotated locations for XP_002922648.1

    UniProtKB/TrEMBL
    D2HJW7, G1M808
    Related
    ENSAMEP00000015478.2, ENSAMET00000016122.2
    Conserved Domains (2) summary
    cd14785
    Location:56 → 76
    V-ATPase_C; 3-helical coiled coil [structural motif]
    pfam03223
    Location:5 → 370
    V-ATPase_C; V-ATPase subunit C
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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