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VMA21 vacuolar ATPase assembly factor VMA21 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100467760, updated on 8-Mar-2024

Summary

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Gene symbol
VMA21
Gene description
vacuolar ATPase assembly factor VMA21
Locus tag
PANDA_014000
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See VMA21 in Genome Data Viewer
Location:
chromosome: X
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) X NC_048238.1 (109256730..109266059)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218112.1 (404723..414042, complement)

Chromosome X - NC_048238.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 50 Neighboring gene uncharacterized LOC117797411 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene PAS domain containing repressor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar ATPase assembly integral membrane protein VMA21
Names
VMA21 vacuolar H+-ATPase homolog
VMA21, vacuolar ATPase assembly factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048238.1 Reference ASM200744v2 Primary Assembly

    Range
    109256730..109266059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002924573.4 → XP_002924619.1  vacuolar ATPase assembly integral membrane protein VMA21

    See identical proteins and their annotated locations for XP_002924619.1

    UniProtKB/TrEMBL
    G1MF07
    Conserved Domains (1) summary
    pfam09446
    Location:25 → 88
    VMA21; VMA21-like domain

  2. XM_019805239.2 → XP_019660798.1  vacuolar ATPase assembly integral membrane protein VMA21

    UniProtKB/TrEMBL
    G1MF07
    Conserved Domains (1) summary
    pfam09446
    Location:25 → 88
    VMA21; VMA21-like domain
Nucleotide Protein
Heading Accession and Version

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