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BFSP2 beaded filament structural protein 2 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100467602, updated on 8-Mar-2024

Summary

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Gene symbol
BFSP2
Gene description
beaded filament structural protein 2
Locus tag
PANDA_013378
See related
Ensembl:ENSAMEG00000000419
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See BFSP2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 6 NC_048223.1 (14616664..14679163, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218047.1 (418429..476908, complement)

Chromosome 6 - NC_048223.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109490361 Neighboring gene CDV3 homolog Neighboring gene uncharacterized LOC117802630 Neighboring gene transmembrane protein 108 Neighboring gene U6 spliceosomal RNA Neighboring gene nephrocystin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phakinin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048223.1 Reference ASM200744v2 Primary Assembly

    Range
    14616664..14679163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034661992.1 → XP_034517883.1  phakinin isoform X1

    UniProtKB/TrEMBL
    D2HNS9
    Related
    ENSAMEP00000000453.1, ENSAMET00000000471.2

  2. XM_011230838.3 → XP_011229140.1  phakinin isoform X2

    See identical proteins and their annotated locations for XP_011229140.1

    UniProtKB/TrEMBL
    D2HNS9
    Conserved Domains (1) summary
    pfam00038
    Location:115 → 414
    Filament; Intermediate filament protein
Nucleotide Protein
Heading Accession and Version

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